hpcf2015.bib
@misc{REU2013Team3IB_HPC2015,
author = {Nil Mistry and Jordan Ramsey and Benjamin Wiley and
Jackie Yanchuck and Xuan Huang and Matthias~K. Gobbert},
title = {Throughput Studies on an {I}nfini{B}and Interconnect
via {A}ll-to-{A}ll Communications},
year = 2015,
note = {23rd High Performance Computing Symposium (HPC 2015).
(HPCF machines used: tara.)}
}
@misc{CalciumGPU_HPC2015,
author = {Xuan Huang and Matthias~K. Gobbert},
title = {Long-time Simulation of Calcium Induced Calcium Release
In A Heart Cell using Finite Element Method
on a Hybrid {CPU}/{GPU} Node},
year = 2015,
note = {23rd High Performance Computing Symposium (HPC 2015).
(HPCF machines used: tara.)}
}
@techreport{OverdispersionModelsInR2015,
author = {Andrew~M. Raim and Nagaraj~K. Neerchal and Jorge~G. Morel},
title = {Modeling Overdispersion in {R}},
number = {HPCF--2015--1},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2015,
pdf = {http://userpages.umbc.edu/~gobbert/papers/OverdispersionModelsInR.pdf},
webnotes = {Files for download with this report:
\href{http://userpages.umbc.edu/~gobbert/papers/OverdispersionModelsInR_0.1.tar.gz}{OverdispersionModelsInR_0.1.tar.gz},
\href{http://userpages.umbc.edu/~gobbert/papers/OverdispersionModelsInR_examples.tar.gz}{OverdispersionModelsInR_examples.tar.gz}
}
}
@article{Bhaskar_EtAl_2014,
author = {Bhaskar, A.S. and Welty, C. and Maxwell, R.M. and Miller, A.J.},
journal = {Water Resources Research},
title = {Untangling the effects of urban development on
subsurface storage in Baltimore},
year = {2015},
volume = {50},
note = {(HPCF machines used: tara.)}
}
@article{IsletNumer_MathBiosci2013,
author = {Samuel Khuvis and Matthias~K. Gobbert and Bradford~E. Peercy},
title = {Time-Stepping Techniques to Enable
the Simulation of Bursting Behavior in a
Physiologically Realistic Computational Islet},
journal = {Math.\ Biosci.},
volume = 263,
pages = {1--17},
year = 2015,
issn = {0025-5564},
doi = {http://dx.doi.org/10.1016/j.mbs.2015.02.001},
url = {http://www.sciencedirect.com/science/article/pii/S0025556415000334},
pdf = {http://userpages.umbc.edu/~gobbert/papers/IsletNumer_MathBiosci2013.pdf},
note = {(HPCF machines used: tara.)}
}
@techreport{PoissonHPCF2015,
author = {Samuel Khuvis and Matthias~K. Gobbert},
title = {Parallel Performance Studies for an Elliptic Test Problem
on the Cluster maya},
number = {HPCF--2015--6},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2015,
pdf = {http://userpages.umbc.edu/~gobbert/papers/PoissonHPCF2015.pdf},
note = {(HPCF machines used: maya.)}
}
@techreport{ParabolicHPCF2015,
author = {Jonathan Graf and Matthias~K. Gobbert},
title = {Parallel Performance Studies for a Parabolic Test Problem
on the Cluster maya},
number = {HPCF--2015--7},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2015,
pdf = {http://userpages.umbc.edu/~gobbert/papers/ParabolicHPCF2015.pdf},
note = {(HPCF machines used: maya.)}
}
@techreport{CalciumHPCF2015,
author = {Xuan Huang and Matthias~K. Gobbert},
title = {Parallel Performance Studies for a Three-Species Application Problem
on the Cluster maya},
number = {HPCF--2015--8},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2015,
pdf = {http://userpages.umbc.edu/~gobbert/papers/CalciumHPCF2015.pdf},
note = {(HPCF machines used: maya.)}
}
@article{DeSouza-Machado_EtAl_2015,
author = {De Souza-Machado, S. and Strow, L. L. and Maddy, E.
and Thomas, G. and Grainger, D. and Robinson, A.},
title = {{Using a synergy of AIRS infrared radiances and MODIS L2
optical depths to retrieve daytime atmospheric dust and volcanic ash heights}},
journal = {Atmos. Meas. Tech. Disc},
volume = 8,
pages = {428--448},
year = 2015,
note = {Submitted. (HPCF machines used: tara.)}
}
@article{Davis_BJ_7_1785_15,
author = {Brittny~C. Davis and Jodian~A. Brown and Ian~F. Thorpe},
title = {{Allosteric Inhibitors Have Distinct Effects, but Also Common Modes
of Action, in the HCV Polymerase}},
journal = {Biophys. J.},
volume = {108},
number = {7},
pages = {1785--1795},
year = {2015},
url = {http://www.cell.com/biophysj/abstract/S0006-3495%2815%2900234-9},
pdf = {http://userpages.umbc.edu/~gobbert/papers/Davis_BJ_7-1785-15.pdf},
note = {(HPCF machines used: tara.)}
}
@article{Zhang_Etal_2015,
author = {Hyoun-Myoung Cho and Zhibo Zhang and Kerry Meyer and Matthew
Lebsock and
Steven Platnik and Andrew~S. Ackerman and Larry Di~Girolamo and
Laurent~C. Labonnote and Celine Cornet and Jermoe Riedi and Robert~E. Holz},
title = {Frequency and causes of failed {MODIS} cloud property retrievals
for liquid phase clouds over global oceans},
journal = {J. Geophys. Res. Atmos.},
volume = {120},
year = {2015},
url = {http://onlinelibrary.wiley.com/wol1/doi/10.1002/2015JD023161/abstract},
note = {(HPCF machines used: tara.)}
}
@misc{HuangThesis2015,
author = {Xuan Huang},
title = {\emph{An MPI-CUDA Implementation of a Model for
Calcium Induced Calcium Release in a
Three-Dimensional Heart Cell on a
Hybrid CPU/GPU Cluster}},
howpublished = {Ph.D. Thesis, Department of Mathematics and Statistics,
University of Maryland, Baltimore County},
year = 2015,
note = {(HPCF machines used: tara, maya.)}
}
@article{Stonko_Etal_2015,
author = {Stonko, David P. AND Manning, Lathiena AND Starz-Gaiano, Michelle AND Peercy, Bradford
E.},
title = {A Mathematical Model of Collective Cell Migration in a Three-Dimensional, Heterogeneous
Environment},
journal = {PLoS ONE},
publisher = {Public Library of Science},
volume = {10},
month = {04},
year = {2015},
number = {4},
pages = {e0122799},
url = {http://dx.doi.org/10.1371%2Fjournal.pone.0122799},
note = {(HPCF machines used: tara.)}
}
@misc{NamayanjaThesis2015,
author = {Josephine Mazzi Namayanja},
title = {\emph{Change Detection in Temporally
Evolving Computer Networks}},
howpublished = {Ph.D. Thesis, Department of Information Systems,
University of Maryland, Baltimore County},
year = 2015,
note = {(HPCF machines used: maya.)}
}
@misc{DavisThesis2015,
author = {Brittny Davis},
title = {\emph{Determining the Molecular Origins of Allostery
for the Polymerase from the Hepatitis {C} Virus}},
howpublished = {Ph.D. Thesis, Department of Chemistry and Biochemistry,
University of Maryland, Baltimore County},
year = 2015,
note = {(HPCF machines used: tara, maya.)}
}
@misc{SeckThesis2015,
author = {Alimatou Seck},
title = {\emph{A fully distributed integrated hydrologic model
for quantifying groundwater dynamics in the Chesapeake Bay Watershed}},
howpublished = {Ph.D. Thesis, Department of Chemical Biochemical and Environmental
Engineering, University of Maryland, Baltimore County},
year = 2015,
note = {(HPCF machines used: tara.)}
}
@article{Seck_EtAl_2015,
author = {Seck, A. and Welty, C. and Maxwell, R.M.},
journal = {Water Resour. Res.},
title = { Spin-up behavior and effects of initial conditions
for an integrated hydrologic model},
year = {2015},
volume = {51},
pages = {2188-2210},
note = {(HPCF machines used: tara.)}
}
@misc{SlettebakThesis2015,
author = {Jack Slettebak},
title = {{The {HPCG} Benchmark for Cluster Computing}},
howpublished = {Senior thesis,
Department of Mathematics and Statistics,
University of Maryland, Baltimore County},
year = 2015,
note = {(HPCF machines used: maya.)},
abstract = {Jack's continuation of Summer 2014, mostly CPU, some Phi}
}
@techreport{COMSOL51_HPCF2015,
author = {Kourosh~M. Kalayeh and Jonathan~S. Graf and Matthias~K. Gobbert},
title = {{FEM} Convergence Studies for 2-{D} and 3-{D} Elliptic {PDE}s with
Smooth and Non-Smooth Source Terms in {COMSOL}~5.1},
number = {HPCF--2015--19},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2015,
url = {hpcf.umbc.edu},
pdf = {http://userpages.umbc.edu/~gobbert/papers/COMSOL51_HPCF2015.pdf},
note = {(HPCF machines used: maya.)}
}
@article{REU2014Radiosity_SIURO,
author = {Oluwapelumi Adenikinju and Julian Gilyard and Joshua Massey
and Thomas Stitt},
title = {Concurrent Solutions to Linear Systems using
Hybrid {CPU}/{GPU} Nodes},
year = 2015,
journal = {SIAM Undergraduate Research Online (SIURO)},
abstract = {2014 Team 5's follow-up to SIURO},
pdf = {http://userpages.umbc.edu/~gobbert/papers/REU2014Radiosity_SIURO.pdf},
url = {http://www.siam.org/students/siuro/vol8/S01377.pdf},
note = {(HPCF machines used: maya.)}
}
@techreport{REU2015Team1,
author = {Ely Biggs and Tessa Helble and George Jeffreys and Amit Nayak
and Elias Al-Najjar and Kofi~P. Adragni and Andrew Raim},
title = {Numerical Evaluation of Minimum Average Deviance Estimation in Ultra High Dimensional
Poisson Regression},
number = {HPCF--2015--21},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2015,
pdf = {http://userpages.umbc.edu/~gobbert/papers/REU2015Team1.pdf},
note = {(HPCF machines used: maya.)}
}
@techreport{REU2015Team2,
author = {Joseph~U. Emelike and David Harper and Charlotte~Z. Mann and Kwame Owusu-Boaitey
and Sai Kumar Popuri and Nagaraj~K. Neerchal and Amita Mehta},
title = {Assessing Decadal Climate Impacts on Water Resources within Missouri River Sub-Basins},
number = {HPCF--2015--22},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2015,
pdf = {http://userpages.umbc.edu/~gobbert/papers/REU2015Team2.pdf},
note = {(HPCF machines used: maya.)}
}
@techreport{REU2015Team3,
author = {Trevor~V. Adriaanse and Meshach Hopkins and Rebecca Rachan and Subodh~R. Selukar
and Elias Al-Najjar and Kofi~P. Adragni and Nusrat Jahan},
title = {Statistical Analysis of a Case-Control Alzheimer’s Disease:
a Retrospective Approach with Sufficient Dimension Reduction},
number = {HPCF--2015--23},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2015,
pdf = {http://userpages.umbc.edu/~gobbert/papers/REU2015Team3.pdf},
note = {(HPCF machines used: maya.)}
}
@techreport{REU2015Team4,
author = {George Eskander and Jennifer Houser and Ellen Prochaska and Jessica Wojtkiewicz
and Teresa Lebair and Bradford~E. Peercy and
Margaret Watts and Arthur Sherman},
title = {Investigating How Calcium Diffusion Affects Metabolic Oscillations and Synchronization of
Pancreatic Beta Cells},
number = {HPCF--2015--24},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2015,
pdf = {http://userpages.umbc.edu/~gobbert/papers/REU2015Team4.pdf},
note = {(HPCF machines used: maya.)}
}
@techreport{REU2015Team5,
author = {Amanda~M. Alexander and Erin~K. DeNardo and
Eric Frazier III and Michael McCauley and Nicholas Rojina
and Zana Coulibaly and Bradford~E. Peercy and Leighton~T. Izu},
title = {Impact of Calcium Store Overload on Electrical Dynamics of Cardiac Myocytes},
number = {HPCF--2015--25},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2015,
pdf = {http://userpages.umbc.edu/~gobbert/papers/REU2015Team5.pdf},
note = {(HPCF machines used: maya.)}
}
@techreport{REU2015Team6,
author = {Changling Huang and Christopher~C. Lowman and Brandon~E. Osborne and Gabrielle~M. Salib
and Ari Rapkin Blenkhorn and Jonathan~S. Graf and Samuel Khuvis and
Matthias~K. Gobbert and Tylor Simon and David~J. Mountain},
title = {Performance Studies of the Blossom V Algorithm},
number = {HPCF--2015--26},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2015,
pdf = {http://userpages.umbc.edu/~gobbert/papers/REU2015Team6.pdf},
note = {(HPCF machines used: maya.)}
}
@techreport{REU2015Team7,
author = {Fernando~X. Avila-Soto and Alec N. Beri and Eric Valenzuela and Abenezer Wudenhe
and Ari Rapkin Blenkhorn and Jonathan~S. Graf and Samuel Khuvis and
Matthias~K. Gobbert and Jerimy Polf},
title = {Parallelization for Fast Image Reconstruction using the Stochastic Origin Ensemble Method
for Proton Beam Therapy},
number = {HPCF--2015--27},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2015,
pdf = {http://userpages.umbc.edu/~gobbert/papers/REU2015Team7.pdf},
note = {(HPCF machines used: maya.)}
}
@techreport{REU2015Team8,
author = {Wesley Collins and Daniel~T. Martinez and Michael Monaghan and Alexey A. Munishkin
and Ari Rapkin Blenkhorn and Jonathan~S. Graf and Samuel Khuvis and
Matthias~K. Gobbert and John~C. Linford},
title = {Comparison of Performance Analysis Tools for Parallel Programs
Applied to CombBLAS},
number = {HPCF--2015--28},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2015,
pdf = {http://userpages.umbc.edu/~gobbert/papers/REU2015Team8.pdf},
note = {(HPCF machines used: maya.)}
}