hpcf2014.bib
@article{CornishEtAl2014,
author = {Cornish, Joseph P. and Sanchez-Alberola, Neus and
ONeill, Patrick K. and O'Keefe, Ronald and Gheba, Jameel
and Erill, Ivan},
title = {Characterization of the {SOS} meta-regulon in the human gut
microbiome},
year = 2014,
journal = {Bioinformatics},
url = {http://bioinformatics.oxfordjournals.org/content/early/2014/01/21/bioinformatics.btt753.abstract},
note = {(HPCF machines used: tara.)}
}
@techreport{StonkoStarzGaianoPeercy2014,
author = {David Stonko and Michelle Starz-Gaiano and Bradford~E. Peercy},
title = {Implementing a Numerical Package to Model Collective Cell
Migration},
number = {HPCF--2014--2},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2014,
pdf = {http://userpages.umbc.edu/~gobbert/papers/Stonko_Technical_Report.pdf},
note = {(HPCF machines used: tara.)}
}
@misc{RaimThesis2014,
author = {Andrew~M. Raim},
title = {\emph{Computational Methods in Finite Mixtures using
Approximate Information and Regression Linked to the Mixture Mean}},
howpublished = {Ph.D. Thesis, Department of Mathematics and Statistics,
University of Maryland, Baltimore County},
year = 2014,
note = {(HPCF machines used: tara.)}
}
@article{PanUMBCReview2013,
author = {Jane Pan and Gemma Gearhart and Shuai Jiang and Thomas~J. May},
title = {Loss of Metabolic Oscillations in a
Multicellular Computational Islet of the Pancreas},
journal = {UMBC Review: Journal of Undergraduate Research},
volume = 15,
pages = {31--53},
year = 2014,
note = {(HPCF machines used: tara.)}
}
@article{Islet_LiB2014,
author = {Gemma Gearhart and Shuai Jiang and Thomas~J. May and Jane Pan and
Samuel Khuvis and Matthias~K. Gobbert and
Bradford~E. Peercy and Arthur Sherman},
title = {Dynamics of Computational Islet Simulations:
Islets with Majority Mutated Open $\mathrm{K_{ATP}}$
Channels Retain Bursting},
journal = {Letters in Biomathematics},
note = {[Invited paper for the inaugural issue of this journal,
published originally in the
Proceedings of the Sixth Symposium on BEER 2013]
(HPCF machines used: tara.)},
year = 2014,
pdf = {http://userpages.umbc.edu/~gobbert/papers/Islet_LiB2014.pdf}
}
@techreport{PoissonHPCF2014,
author = {Samuel Khuvis and Matthias~K. Gobbert},
title = {Parallel Performance Studies for an Elliptic Test Problem
on maya 2013},
number = {HPCF--2014--6},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2014,
pdf = {http://userpages.umbc.edu/~gobbert/papers/PoissonHPCF2014.pdf},
note = {(HPCF machines used: maya.)}
}
@techreport{ParabolicHPCF2014,
author = {Jonathan Graf and Matthias~K. Gobbert},
title = {Parallel Performance Studies for a Parabolic Test Problem
on maya 2013},
number = {HPCF--2014--7},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2014,
pdf = {http://userpages.umbc.edu/~gobbert/papers/ParabolicHPCF2014.pdf},
note = {(HPCF machines used: maya.)}
}
@techreport{CalciumHPCF2014,
author = {Xuan Huang and Matthias~K. Gobbert},
title = {Parallel Performance Studies for a Three-Species Application Problem
on maya 2013},
number = {HPCF--2014--8},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2014,
pdf = {http://userpages.umbc.edu/~gobbert/papers/CalciumHPCF2014.pdf},
note = {(HPCF machines used: maya.)}
}
@techreport{StonkoKhuvisGobbertHPCF2014,
author = {David Stonko and Samuel Khuvis and Matthias~K. Gobbert},
title = {Numerical Methods to Solve 2-D and 3-D Elliptic
Partial Differential Equations Using {M}atlab on the Cluster maya},
number = {HPCF--2014--9},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2014,
pdf = {http://userpages.umbc.edu/~gobbert/papers/StonkoEtAl_HPCF2014.pdf},
note = {(HPCF machines used: maya.)}
}
@techreport{SawtskiKhuvisGobbertHPCF2014,
author = {Sarah Swatski and Samuel Khuvis and Matthias~K. Gobbert},
title = {A Comparison of Solving the Poisson Equation Using Several Numerical Methods
in {M}atlab and {O}ctave on the Cluster maya},
number = {HPCF--2014--10},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2014,
pdf = {http://userpages.umbc.edu/~gobbert/papers/SwatskiEtAl_HPCF2014.pdf},
note = {(HPCF machines used: maya.)}
}
@techreport{REU2014Team1,
author = {Nancy Hong and Emily Jasien and Christopher Pagan and Daniel Xie
and Zana Coulibaly and Kofi~P. Adragni and Ian~F. Thorpe},
title = {Nonlinear Measurers of Correlation and Dimensionality Reduction
with Application to Protein Motion},
number = {HPCF--2014--11},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2014,
pdf = {http://userpages.umbc.edu/~gobbert/papers/REU2014Team1.pdf},
note = {(HPCF machines used: maya.)}
}
@techreport{REU2014Team2,
author = {Christopher Evans and Abigail Gartrell and Lauren Gomez and
Moise Mouyebe and Darius Oxley and Sai Kumar Popuri and
Nagaraj~K. Neerchal and Amita Mehta},
title = {Improving the Computational Efficiency of Downscaling {GCM}
Data for Use in {SWAT}},
number = {HPCF--2014--12},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2014,
pdf = {http://userpages.umbc.edu/~gobbert/papers/REU2014Team2.pdf},
note = {(HPCF machines used: maya.)}
}
@techreport{REU2014Team3,
author = {Annie Dai and David Palensky and Alex Piatski and Kendall Queen
and Gina Vockeroth and Teresa Lebair and Bradford~E. Peercy and
Margaret Watts and Arthur Sherman},
title = {Modeling the Building Blocks of the Pancreatic Islet:
Connecting Alpha, Beta, and Delta Cells},
number = {HPCF--2014--13},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2014,
pdf = {http://userpages.umbc.edu/~gobbert/papers/REU2014Team3.pdf},
note = {(HPCF machines used: maya.)}
}
@techreport{REU2014Team4,
author = {Adam Cunningham and Gerald Payton and Jack Slettebak
and Jordi Wolfson-Pou and Jonathan Graf and Xuan Huang and
Samuel Khuvis and Matthias~K. Gobbert and Thomas Salter
and David~J. Mountain},
title = {Pushing the Limits of the Maya Cluster},
number = {HPCF--2014--14},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2014,
pdf = {http://userpages.umbc.edu/~gobbert/papers/REU2014Team4.pdf},
note = {(HPCF machines used: maya.)}
}
@techreport{REU2014Team5,
author = {Oluwapelumi Adenikinju and Julian Gilyard and Joshua Massey
and Thomas Stitt and Jonathan Graf and Xuan Huang and
Samuel Khuvis and Matthias~K. Gobbert and Yu Wang and
Marc Olano},
title = {Real Time Global Illumination Solutions to the
Radiosity Algorithm using Hybrid {CPU}/{GPU} Nodes},
number = {HPCF--2014--15},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2014,
pdf = {http://userpages.umbc.edu/~gobbert/papers/REU2014Team5.pdf},
note = {(HPCF machines used: maya.)}
}
@misc{Stonko_Masters_Thesis,
author = {David~P. Stonko},
title = {A Discrete, Three-Dimensional, Force-Based
Mathematical Model of Collective Cell Migration},
howpublished = {M.S.~Thesis,
Department of Mathematics and Statistics,
University of Maryland, Baltimore County},
year = {2014},
pdf = {http://userpages.umbc.edu/~gobbert/papers/Stonko_Masters_Thesis.pdf},
note = {(HPCF machines used: tara.)}
}
@article{Weiblen_OptExpress2014,
author = {R. J. Weiblen and A. Docherty and C. R. Menyuk and
L. B. Shaw and J. S. Sanghera and I. D. Aggarwal},
journal = {Opt. Express},
number = {18},
pages = {22220--22231},
publisher = {OSA},
title = {Calculation of the expected output spectrum for a mid-infrared
supercontinuum source based on {A}s{2S3} chalcogenide
photonic crystal fibers},
volume = {22},
year = 2014,
pdf = {http://userpages.umbc.edu/~gobbert/papers/Weiblen_OptExpress2014.pdf},
url = {http://www.opticsexpress.org/abstract.cfm?URI=oe-22-18-22220},
note = {(HPCF machines used: tara.)}
}
@article{Hu_JLightwareTech_2014,
author = {Hu, Y. and Marks, B.S. and Menyuk, C.R. and Urick, V.J. and Williams, K.J.},
journal = {Journal of Lightwave Technology},
title = {Modeling Sources of Nonlinearity in a Simple p-i-n Photodetector},
year = {2014},
volume = {32},
number = {20},
pages = {3710-3720},
issn = {0733-8724},
pdf = {http://userpages.umbc.edu/~gobbert/papers/Hu_JLightwareTech_2014.pdf},
note = {(HPCF machines used: tara.)}
}
@misc{BrewsterThesis2014,
author = {Matthew~W. Brewster},
title = {The Influence of Stochastic Parameters
on Calcium Waves in a Heart Cell},
howpublished = {Senior thesis,
Department of Mathematics and Statistics,
University of Maryland, Baltimore County},
year = 2014,
pdf = {http://userpages.umbc.edu/~gobbert/papers/BrewsterThesis2014.pdf},
note = {(HPCF machines used: tara.)}
}
@article{ONeill_EtAl_2014,
author = {O'Neill, P.K. and Forder, R. and Erill, I.},
journal = {Journal of Computational Biology},
title = {Informational requirements for transcriptional regulation},
year = {2014},
volume = {21},
number = {5},
pages = {373-384},
temppdf = {http://userpages.umbc.edu/~gobbert/papers/ONeill_EtAl_2014.pdf},
note = {(HPCF machines used: tara.)}
}
@misc{Wallbaum_GAMM2014,
author = {Matthias~K. Gobbert and Andreas Meister and Sven Wallbaum},
title = {On Unconditionally Positivity Preserving and Conservative Methods
for Systems of Advection-Diffusion-Reaction Equations},
note = {\emph{Proc.\ Appl.\ Math.\ Mech. (PAMM)}, submitted}
}
@article{Cui_EtAl_2014,
author = {Cui, Z. and Welty, C. and Maxwell, R.M.},
journal = {Computers and Geosciences},
title = {Modeling Nitrogen Transport and Transformation in Aquifers Using a
Particle-Tracking Approach},
year = {2014},
volume = {70},
pages = {1-14},
note = {(HPCF machines used: tara.)}
}
@inproceedings{ApproxFIMJSM2014,
author = {Andrew~M. Raim and Nagaraj~K. Neerchal and Jorge~G. Morel},
title = {Large Cluster Approximation to the Finite Mixture Information
Matrix with an Application to Meta-Analysis},
booktitle = {JSM Proceedings, Statistical Computing Section.
Alexandria, VA: American Statistical Association},
year = 2014,
pages = {4025--4037},
url = {
http://www.amstat.org/meetings/jsm/2014/onlineprogram/AbstractDetails.cfm?abstractid=313589
},
preprint = {http://www.umbc.edu/~araim1/pub/ApproxFIMJSM2014.pdf}
}
@techreport{pMatlab_HPCF2014,
author = {Sarah Swatski},
title = {Investigating the Use of p{M}atlab to Solve
the {P}oisson Equation on the Cluster maya},
number = {HPCF--2014--24},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2014,
pdf = {http://userpages.umbc.edu/~gobbert/papers/pMatlab_HPCF2014.pdf},
note = {(HPCF machines used: maya.)}
}
@techreport{KalayehHPCF2014,
author = {Kourosh~M. Kalayeh},
title = {Parallel Performance Studies for an Elliptic Test problem on the
Cluster maya 2013: Using 1-{D} and 2-{D} domain subdivisions},
number = {HPCF--2014--25},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2014,
pdf = {http://userpages.umbc.edu/~gobbert/papers/Kalayeh_HPCF2014.pdf},
note = {(HPCF machines used: maya.)}
}
@article{Draganescu_2014,
author = {Andrei Draganescu},
journal = {Optimization Methods and Software},
title = {Multigrid Preconditioning of Linear Systems for Semi-smooth {N}ewton Methods
Applied to Optimization Problems Constrained by Smoothing Operators},
year = {2014},
volume = {29},
number = {4},
pages = {786-818}
}
@misc{McHenryThesis2014,
author = {Jonathan~S. McHenry},
title = {\emph{Parallel Regularized Maximum Likelihood
Estimation for Proportional Odds Models}},
howpublished = {Ph.D. Thesis, Department of Mathematics and Statistics,
University of Maryland, Baltimore County},
year = 2014,
note = {(HPCF machines used: maya.)}
}
@misc{Nejad_Masters_Thesis,
author = {Mahsan Bakhtiari Nejad},
title = {TOPOLOGY OPTIMIZATION BASED ON
MORPHING MESH FOR SIMULTANEOUS COMPONENT
RELOCATION AND FRAME STRUCTURE.},
howpublished = {M.S.~Thesis,
Department of Mechanical Engineering,
University of Maryland, Baltimore County},
year = {2014},
note = {(HPCF machines used: tara.)}
}