hpcf2009.bib
@techreport{SharmaGobbertTR2009,
author = {Neeraj Sharma and Matthias~K. Gobbert},
title = {Performance Studies for Multithreading in {M}atlab
with Usage Instructions on hpc},
number = {HPCF--2009--1},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2009,
abstract = {Neeraj's Matlab simulations on hpc with usage instructions},
url = {http://userpages.umbc.edu/~gobbert/papers/SharmaGobbertTR2009.pdf},
note = {(HPCF machines used: hpc.)}
}
@techreport{GassmanGobbertTRMatlab2009,
author = {Amanda~K. Gassman and Matthias~K. Gobbert},
title = {Solving a Two-Dimensional Elliptic Model Problem
with the Conjugate Gradient Method Using
Matrix-Free {SSOR} Preconditioning in {Matlab}},
number = {HPCF--2009--2},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2009,
abstract = {Amanda's Matlab results for matrix-free SSOR preconditioning},
url = {http://userpages.umbc.edu/~gobbert/papers/GassmanGobbertTRMatlab2009.pdf},
note = {(HPCF machines used: hpc.)}
}
@techreport{Interface1DTR2009,
author = {Guan Wang and Aaron Churchill and
Matthias~K. Gobbert and Thomas~I. Seidman},
title = {Efficient Computation for a Reaction-Diffusion System
with a Fast Reaction with Continuous and Discontinuous Initial Data
Using {COMSOL} {M}ultiphysics},
number = {HPCF--2009--3},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2009,
abstract = {Guan's 1-D results for three species and two component model},
url = {http://userpages.umbc.edu/~gobbert/papers/Interface1DTR2009.pdf},
note = {(HPCF machines used: hpc.)}
}
@techreport{PetraGobbertTR2009,
author = {Noemi Petra and Matthias~K. Gobbert},
title = {Performance Studies with {COMSOL} {M}ultiphysics
via Scripting and Batch Processing},
number = {HPCF--2009--4},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2009,
abstract = {Noemi's COMSOL simulations on hpc with usage instructions},
url = {http://userpages.umbc.edu/~gobbert/papers/PetraGobbertTR2009.pdf},
note = {(HPCF machines used: hpc.)},
webnotes = {Files for download with this report: \href{http://userpages.umbc.edu/~gobbert/papers/poisson2d.m}{poisson2d.m},
\href{http://userpages.umbc.edu/~gobbert/papers/poisson2d_graphics.m}{poisson2d_graphics.m},
\href{http://userpages.umbc.edu/~gobbert/papers/poisson2d_matlab.m}{poisson2d_matlab.m},
\href{http://userpages.umbc.edu/~gobbert/papers/poisson2d_infile.mph}{poisson2d_infile.mph},
\href{http://userpages.umbc.edu/~gobbert/papers/qsub-COMSOL_with_MATLAB}{qsub-COMSOL_with_MATLAB},
\href{http://userpages.umbc.edu/~gobbert/papers/qsub-COMSOL}{qsub-COMSOL}}
}
@techreport{WangGobbertTR2009,
author = {Guan Wang and Matthias~K. Gobbert},
title = {Performance Comparison between Blocking and Non-Blocking
Communications for a Three-Dimensional {P}oisson Problem},
number = {HPCF--2009--5},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2009,
abstract = {Guan's Math 627 report on hpc comparing Ssend and Isend},
note = {(HPCF machines used: hpc.)},
url = {http://userpages.umbc.edu/~gobbert/papers/WangGobbertTR2009.pdf}
}
@techreport{SigmaPumpTR2009,
author = {Zana Coulibaly and Michael Muscedere and
Matthias~K. Gobbert and Bradford~E. Peercy},
title = {Long-Time Simulation of Calcium Waves in a Heart Cell to
Study the Effects of Calcium Release Flux Density and of
Coefficients in the Pump and Leak Mechanisms on
Self-Organizing Wave Behavior},
number = {HPCF--2009--6},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2009,
abstract = {Zana's Math 627 and Michael's Math 699 reports},
note = {(HPCF machines used: hpc.)},
url = {http://userpages.umbc.edu/~gobbert/papers/SigmaPumpTR2009.pdf}
}
@techreport{Interface2DTR2009,
author = {Aaron Churchill and Matthias~K. Gobbert and Thomas~I. Seidman},
title = {Efficient Computation for a Reaction-Diffusion System
with a Fast Reaction in Two Spatial Dimensions
using {COMSOL} {M}ultiphysics},
number = {HPCF--2009--7},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2009,
abstract = {Aaron's 2-D results for three species and two component model},
note = {(HPCF machines used: hpc.)},
url = {http://userpages.umbc.edu/~gobbert/papers/Interface2DTR2009.pdf}
}
@techreport{RaimGobbertTR2009,
author = {Andrew~M. Raim and Matthias~K. Gobbert},
title = {Parallel Performance Studies for a
Maximum Likelihood Estimation Problem Using {TAO}},
number = {HPCF--2009--8},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2009,
note = {(HPCF machines used: hpc.)},
url = {http://userpages.umbc.edu/~gobbert/papers/RaimGobbertTR2009.pdf}
}
@techreport{SzatmaryEggletonTR2009,
author = {A. Szatmary and C.~D. Eggleton},
title = {Modeling Fluid-Structure Interactions in Non-Periodic Viscous
Flow with the Immersed Boundary
Method and {C}horin's Projection Method in {F}ourier Space},
number = {HPCF--2009--9},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2009,
note = {(HPCF machines used: hpc.)}
}
@article{SergioEtAlJGR2009,
author = {S.~G. DeSouza-Machado and L.~L. Strow and B. Imbiriba and
K. McCann and R.~M. Hoff and S.~E. Hannon and J.~V. Martins and
D. Tanr\'{e} and J.~L. Deuz\'{e} and F. Ducos and O. Torres},
title = {Infrared retrievals of dust using {AIRS}: Comparisons of optical
depths and heights derived for a {North African} dust storm to
other collocated {EOS A-Train} and surface observations},
year = 2010,
journal = {Journal of Geophysical Research (Atmospheres)},
volume = 115,
note = {(HPCF machines used: hpc.)}
}
@article{ReidUMBCReview2010,
author = {Michael J. Reid},
title = {Parallel Performance Studies for a Numerical Simulator
of Atomic Layer Deposition},
journal = {UMBC Review: Journal of Undergraduate Research},
year = 2010,
volume = 11,
pages = {30--41},
url = {http://userpages.umbc.edu/~gobbert/papers/ReidUMBCReview2010.pdf},
note = {(HPCF machines used: hpc.) Pre-print PDF is given here.}
}
@techreport{YangTR2009,
author = {Yushu Yang},
title = {Parallel Studies for Chemically Reacting Systems},
number = {HPCF--2009--12},
institution = {UMBC High Performance Computing Facility,
University of Maryland, Baltimore County},
year = 2009,
url = {http://userpages.umbc.edu/~gobbert/papers/627project-report-Yushu.pdf},
note = {(HPCF machines used: hpc.)}
}
@inproceedings{PetraGobbertCOMSOL2009,
author = {Noemi Petra and Matthias~K. Gobbert},
title = {Parallel Performance Studies for {COMSOL} {M}ultiphysics
Using Scripting and Batch Processing},
editor = {Yeswanth Rao},
booktitle = {Proceedings of the {COMSOL} Conference 2009, Boston, MA},
url = {http://userpages.umbc.edu/~gobbert/papers/PetraGobbertCOMSOL2009.pdf},
year = 2009,
note = {(HPCF machines used: hpc.)}
}
@inproceedings{GobbertEtAlCOMSOL2009,
author = {Matthias~K. Gobbert and Aaron Churchill and Guan Wang and
Thomas~I. Seidman},
title = {{COMSOL} {M}ultiphysics for Efficient Solution
of a Transient Reaction-Diffusion System with Fast Reaction},
editor = {Yeswanth Rao},
booktitle = {Proceedings of the {COMSOL} Conference 2009, Boston, MA},
url = {http://userpages.umbc.edu/~gobbert/papers/GobbertEtAlCOMSOL2009.pdf},
year = 2009,
note = {(HPCF machines used: hpc.)}
}
@inproceedings{BhaskarWeltyMaxwell2009,
author = {Bhaskar, A. and C. Welty and R. Maxwell},
year = 2009,
title = {Urban Watershed Modeling Across Landscape Scales},
booktitle = {American Geophysical Union, Fall Meeting},
note = {(HPCF machines used: hpc.)}
}
@inproceedings{ElliottEtAl2009,
author = {D.~A. Elliott and H.~H. Aumann and L.~L. Strow and S.~E. Hannon},
title = {Two-year comparison of radiances from the Atmospheric Infrared
Sounder ({AIRS}) and the Infrared Atmospheric Sounding
Interferometer ({IASI})},
booktitle = {Society of Photo-Optical Instrumentation Engineers (SPIE)
Conference Series},
volume = 7456,
year = 2009,
note = {(HPCF machines used: hpc.)}
}
@inproceedings{ManningEtAl2009,
author = {E.~M. Manning and H.~H. Aumann and R.~G. Deen and Y. Jiang and
L.~L. Strow and S.~E. Hannon},
title = {Spectral calibration in hyperspectral sounders},
booktitle = {Society of Photo-Optical Instrumentation Engineers (SPIE)
Conference Series},
volume = 7452,
year = 2009,
note = {(HPCF machines used: hpc.)}
}
@article{ShenFrey2009,
author = {H. Shen and D. D. Frey},
title = {Serial displacement chromatofocusing and its applications in
{2D-PAGE} and {2D-HPLC}. Part 1: Theory and general considerations},
journal = {J. Chromatogr.\ A},
volume = 1216,
pages = {977--986},
year = 2009
}
@article{YangGobbertAML2007,
author = {Shiming Yang and Matthias~K. Gobbert},
title = {The Optimal Relaxation Parameter for the {SOR} Method
Applied to the {P}oisson Equation in Any Space Dimensions},
journal = {Appl.\ Math.\ Lett.},
volume = 22,
pages = {325--331},
url = {http://www.sciencedirect.com/science/article/pii/S0893965908001523},
pdf = {http://userpages.umbc.edu/~gobbert/papers/YangGobbertAML2007.pdf},
year = 2009
}